PROGRAM
SCHEDULE
Sunday,
June 26
docking
and binding
7:30 Continental breakfast
8:40 Welcome –
Organizers, KU Administration
Session
chair: Sternberg
9:00 Olson, Visualizing
large biomolecular complexes
9:30 Honig, How
to achieve high specificity with low affinity binding: Lessons from the
cadherin family of cell-adhesion proteins
10:00 Nussinov, Modeling
interactions in large multimolecular assemblies and in protein
molecules by
combinatorial docking
11:00 Abagyan, Structural
patterns and the specificity of recognition
11:30 Gray, “Truly
blind” docking of a novel anti-cancer therapeutic antibody to the
epidermal
growth factor receptor
Session
chair: Olson
1:30 Weng, Structure,
function and evolution of transient and obligate protein-protein
interactions
2:00 Camacho, Everything
you need to know but are afraid to ask about scoring functions of
protein
complexes
2:30 Ten Eyck,
TBA
3:30 Janin, Structural
patterns in specific recognition
4:00 Vajda, Cluster
selection and in-cluster refinement for discrimination in
protein-protein
docking
4:30 Free time, dinner on your own
POSTER
SESSION
8:00-10:00 Poster
presentations, open
bar
monday,
June 27
interactome,
structure-function, Energetics
7:30 Continental breakfast
Session
chair: Janin
8:30 Skolnick, Prediction
of protein structure, function and druggability
on a
proteomic scale
9:00 Washburn, Qualitative
and quantitative proteomic analysis via MudPIT
9:30 Frishman, A
domain interaction map based on phylogenetic profiling
10:00 Coffee break
10:30 Sternberg, Protein
Phenetics - Function, Classification and
Interactions
11:00 Aloy, A structural
perspective on protein interactions and complexes
11:30 Liang, Inferring
protein function by local surface matching and similarity assessment
12:00 Lunch
Session
chair: Nussinov
1:30 Godzik, Protein
interaction networks and disease
2:00
2:30
3:00 Coffee break
Discussion
3:30
Wodak, Protein-protein docking procedures:
Lessons learned
from
4:00-5:30 Future of Protein
Interaction
Modeling
6:15 Departure for dinner
9:00-10:00 Keynote address: Scheraga,
Overview of protein folding
tuesday,
June
28
Folding
and binding
7:30 Continental breakfast
Session
chair:
8:30 Scheraga, The
protein folding problem: structure and folding pathways
9:00 Brooks, Mechanism
and energetics of insertion, folding and assembly of integral membrane
peptides
and proteins
9:30 Jernigan, Representing
protein dynamics with elastic networks
10:30 Levy, Effective potentials for
protein folding and binding with
applications using replica exchange simulations
11:00 Kuczera, Modeling
interactions of proteins involved in calcium signaling
11:30 Wriggers, Probing
the functional dynamics of protein assemblies by hybrid computational
strategies