PROGRAM
THURSDAY, November 8
| 7:30 | Continental breakfast |
| 8:25 | Welcome - Organizers |
| Session chair: | Sternberg |
| 8:35 | Honig, | Structure-based protein-protein interaction networks |
| 9:00 | Nussinov, | The structural basis for signaling in cancer and inflammation |
| 9:25 | Brooks, | Exploring protein-protein interactions in transcriptional activation |
| 9:50 | Olson, | Interacting with the Molecular Cell |
| 10:15 | Coffee break |
| Session chair: | Honig |
| 10:45 | Sternberg, | Prediction and analysis of the sructural impact of missense variants in experimental and predicted structures |
| 11:10 | Bahar, | Structural dynamics is a determinant of the impact of missense variants |
| 11:35 | Grishin, | Fun with interactions |
| 12:00 | Lunch |
| Session chair: | Moult |
| 1:30 | Skolnick, | PROGNOSTIX: A computational pipeline for small molecule compound and adverse drug side effect discovery |
| 1:55 | Camacho, | Chemical modulation of gene networks: A novel path to drug the undruggable |
| 2:20 | Karanicolas, | Comparative modeling of Type I kinase inhibitors |
| 2:45 | Coffee break |
| Session chair: | Brooks |
| 3:15 | Lichtarge, | A complete differential and integral calculus of fitness landscape suggests which genes drive disease phenotypes |
| 3:40 | Feig, | Diffusion and clustering in dense protein solutions |
| 4:05 | Godzik, | Understanding cancer mutations through protein structures |
| 4:30 | Dunbrack, | Classification of active and inactive protein kinase structures |
| 4:55 | Free time, dinner on your own |
| Poster session |
| 8:00 - 10:00 | Poster presentations, open bar |
FRIDAY, November 9
| 7:30 | Continental breakfast |
| Session chair: | Skolnick |
| 8:35 | Moult, | CASP progress |
| 9:00 | Levy, | Exploring fitness and free energy landscapes of proteins |
| 9:25 | Elber, | Modeling molecular machines |
| 9:50 | Slusky, | The structural evolution of outer membrane proteins |
| 10:15 | Coffee break |
| Session chair: | Feig |
| 10:45 | Jernigan, | Using structure information to improve sequence matching |
| 11:10 | Elofsson, | Examining the accuracy of state of the art contact predictions for domain-domain interactions |
| 11:35 | Im, | Quantitative characterization of protein-lipid interactions |
| 12:00 | Lunch |
| Session chair: | Grishin |
| 1:30 | Wodak, | Self-association primes proteins for new function: The role of altered dynamic properties |
| 1:55 | Bonvin, | Integrative modeling of biomolecular complexes: Moving into membranes |
| 2:20 | Weng, | Using biological data to guide protein-protein docking |
| 2:45 | Coffee break |
| Session chair: | Wodak |
| 3:15 | Mitchell, | Feature selection in a KFC2-Rosetta hybrid model of PPI hot spots |
| 3:40 | Vajda, | Binding free energy changes upon antibody maturation |
| 4:05 | Ma, | New empirical scoring functions for evaluating protein structures |
| 4:30 | Kozakov, | Fast simulations of macromolecular interactions |
| 4:55 | DISCUSSION: | New challenges in modeling of biomolecular interactions |
| 6:30 | Reception and | 7:00 - 9:00 | Dinner at Eldridge |
SATURDAY, November 10
| 7:30 | Continental breakfast |
| Session chair: | Levy |
| 8:35 | Zhou, | Physical basis of protein liquid-liquid phase separation |
| 9:00 | Dokholyan, | Molecular design for research and therapeutics |
| 9:25 | Joachimiak, | Social life of microbial communities: Toxins-immunity proteins interactions in the contact-dependent growth inhibition systems |
| 9:50 | Liang, | Stochastic control of biological functions: Membrane protein gating and cellular fate in HIV latency\ |
| 10:15 | Coffee break |
| Session chair: | Bahar |
| 10:45 | Ben-Tal, | Trasport determinants in cation/proton antiporters: Phylogenetic analysis and simulations guide experiments |
| 11:10 | Vakser, | Structural modeling of interactome |
| 11:35 | Xu, | Distance-based protein folding powered by Deep Learning |
| 12:00 | Lunch |
| Session chair: | Zhou |
| 1:30 | Miao, | Enhanced sampling of GPCR-G Protein interactions |
| 1:55 | Grudinin, | Predicting protein interactions with protein flexibility and small-angle scattering profiles |
| 2:20 | Bates, | Deep learning the relationships between cells in the tumor microenvironment |
| 2:45 | Coffee break |
| Session chair: | Lichtarge |
| 3:15 | Deeds, | Speed, robustness and the evolution of macromolecular assembly pathways |
| 3:40 | Ray, | Intergenerational cellular signaling and erasure |
| 4:05 | Kundrotas, | Sequence variability and function diversity at protein-protein interfaces |
| 4:30 | Concluding remarks - Vakser, Vajda |